Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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[Homology]
Score
Psta_4063KEGG: xau:Xaut_3968 putative secreted protein. (441 aa)    
Predicted Functional Partners:
Psta_3935
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gsu:GSU3246 thioredoxin peroxidase.
  
 
 0.806
Psta_4065
PFAM: metallophosphoesterase; KEGG: acr:Acry_0194 radical SAM domain-containing protein.
 
    0.785
Psta_4064
PFAM: Radical SAM domain protein; KEGG: maq:Maqu_0146 radical SAM domain-containing protein.
 
     0.780
Psta_1583
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sfu:Sfum_1708 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.595
Psta_1606
PFAM: Thioredoxin domain; KEGG: pzu:PHZ_c0019 thioredoxin.
  
 
 0.595
Psta_2016
PFAM: Thioredoxin domain; KEGG: Os07g0190800; hypothetical protein; K03671 thioredoxin 1.
  
 
 0.595
Psta_3598
Hypothetical protein; KEGG: rpb:RPB_4360 thiol:disulfide interchange protein.
  
 
 0.595
msrQ
Oxidoreductase FAD-binding domain protein; Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of [...]
   
 
 0.585
Psta_3569
KEGG: hypothetical protein.
 
 
 
 0.577
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.475
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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