STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4114PFAM: protein of unknown function DUF58; KEGG: dal:Dalk_1547 protein of unknown function DUF58. (451 aa)    
Predicted Functional Partners:
Psta_4113
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: dal:Dalk_1546 transglutaminase domain protein.
 
    0.898
Psta_4115
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein.
  
    0.797
Psta_2975
KEGG: hch:HCH_02245 hypothetical protein.
  
     0.554
Psta_2509
KEGG: scl:sce7146 hypothetical protein.
  
     0.521
Psta_4116
Hypothetical protein.
       0.474
Psta_4172
Hypothetical protein; KEGG: hch:HCH_03967 tRNA nucleotidyltransferase/poly(A) polymerase.
  
    0.457
Psta_3388
KEGG: mxa:MXAN_4938 hypothetical protein.
  
     0.448
Psta_2510
KEGG: mxa:MXAN_2319 hypothetical protein.
  
     0.441
Psta_1895
PFAM: Vault protein inter-alpha-trypsin domain protein; TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Vault protein inter-alpha-trypsin, metazoa; Tetratricopeptide domain protein; KEGG: scl:sce7031 hypothetical protein.
  
     0.409
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.