STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4119TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: Haemagluttinin repeat-containing protein; Hemolysin-type calcium-binding region; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel. (2976 aa)    
Predicted Functional Partners:
Psta_3388
KEGG: mxa:MXAN_4938 hypothetical protein.
  
    0.497
Psta_0572
PFAM: peptidase domain protein; KEGG: sse:Ssed_3289 PKD repeat-containing protein.
  
   0.432
Psta_1935
TIGRFAM: outer membrane adhesin like proteiin; PFAM: cellulosome protein dockerin type I; KEGG: cja:CJA_1396 putative hemolysin.
  
   0.430
Psta_1799
PFAM: peptidase M50; KEGG: bav:BAV1942 membrane protein.
  
     0.406
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.