Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_4172Hypothetical protein; KEGG: hch:HCH_03967 tRNA nucleotidyltransferase/poly(A) polymerase. (442 aa)    
Predicted Functional Partners:
Psta_2185
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
  
     0.722
Psta_4287
KEGG: scl:sce7370 hypothetical protein.
  
     0.721
Psta_0859
Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: mgm:Mmc1_2199 membrane-fusion protein-like protein.
  
     0.702
Psta_1874
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.689
Psta_4173
DNA-binding protein; KEGG: cbc:CbuK_1387 bacterial DNA-binding protein.
 
     0.672
Psta_1964
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.668
Psta_0136
Hypothetical protein; KEGG: pat:Patl_3492 twin-arginine translocation pathway signal.
  
     0.655
Psta_2388
KEGG: ank:AnaeK_0667 hypothetical protein.
  
     0.651
Psta_2902
Hypothetical protein.
  
     0.649
Psta_1408
Glucuronate isomerase-like protein; KEGG: hypothetical protein.
  
     0.640
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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