STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4178PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dal:Dalk_3153 endonuclease/exonuclease/phosphatase. (290 aa)    
Predicted Functional Partners:
Psta_0124
KEGG: swp:swp_0420 hypothetical protein.
  
     0.739
Psta_4177
Hypothetical protein.
       0.705
Psta_1281
KEGG: pzu:PHZ_c2448 hypothetical protein.
  
     0.677
Psta_1222
PFAM: outer membrane efflux protein; KEGG: acp:A2cp1_2479 outer membrane efflux protein.
  
     0.661
Psta_1934
PFAM: peptidase domain protein; cellulosome protein dockerin type I; KEGG: eli:ELI_06165 hypothetical protein.
  
  
 0.659
Psta_3098
KEGG: cja:CJA_2486 hypothetical protein.
  
     0.646
Psta_1647
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Peptidoglycan-binding domain 1 protein; beta-lactamase; KEGG: hypothetical protein.
 
   
 0.629
Psta_2516
KEGG: scl:sce5364 hypothetical protein.
  
     0.625
Psta_1240
PFAM: protein of unknown function DUF1624; KEGG: rso:RSc2728 hypothetical protein.
  
     0.615
Psta_4575
KEGG: gbm:Gbem_2590 pilin domain protein.
  
     0.544
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.