Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_4258PFAM: sulfatase; KEGG: swd:Swoo_3661 sulfatase. (516 aa)    
Predicted Functional Partners:
Psta_4259
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: pca:Pcar_2074 molybdenum cofactor biosynthesis protein.
       0.651
Psta_4257
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: pfl:PFL_2821 transport protein ExbB2.
       0.576
Psta_4256
KEGG: mag:amb3422 hypothetical protein; TIGRFAM: heme-binding protein; PFAM: Laminin G sub domain 2; SMART: Laminin G.
       0.433
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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