STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4308KEGG: met:M446_2019 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Psta_1353
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rso:RSc0983 hypothetical protein.
  
     0.594
Psta_2233
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce4229 putative exonuclease.
  
     0.496
Psta_4428
KEGG: bcb:BCB4264_A3230 hypothetical cytosolic protein.
  
     0.493
Psta_3172
PFAM: Basic Secretory Protein; KEGG: smt:Smal_3351 hypothetical protein.
  
     0.476
Psta_1840
KEGG: bra:BRADO4970 hypothetical protein.
  
     0.451
Psta_2517
KEGG: mlo:mlr1105 hypothetical protein.
  
     0.451
Psta_3954
SMART: Tetratricopeptide domain protein; KEGG: binding.
  
     0.430
purC
KEGG: gur:Gura_2868 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase.
       0.413
Psta_1321
Hypothetical protein; KEGG: mxa:MXAN_6474 putative ABC transporter, permease protein.
  
     0.400
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.