Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_4459KEGG: mno:Mnod_2531 hypothetical protein; Belongs to the peptidase S1B family. (1358 aa)    
Predicted Functional Partners:
Psta_4460
PFAM: Endonuclease I; KEGG: mxa:MXAN_2141 putative protease / nuclease, EndA/NucM family.
 
     0.799
Psta_4458
PFAM: cytochrome P450; KEGG: scl:sce0675 cytochrome P450 CYP267A1.
       0.773
Psta_4464
PFAM: Endonuclease I; KEGG: mxa:MXAN_2141 putative protease / nuclease, EndA/NucM family.
 
     0.722
Psta_4461
PFAM: DNA/RNA non-specific endonuclease; peptidase S8 and S53 subtilisin kexin sedolisin; SMART: DNA/RNA non-specific endonuclease; KEGG: jan:Jann_3581 DNA/RNA non-specific endonuclease.
 
     0.717
Psta_0305
PFAM: protein of unknown function DUF1552; KEGG: mxa:MXAN_4109 hypothetical protein.
  
     0.525
Psta_4462
PFAM: lipase class 3; KEGG: ppr:PBPRA1385 hypothetical protein.
     
 0.496
Psta_4463
Hypothetical protein; KEGG: scl:sce3803 putative ATP/GTP-binding protein.
 
     0.484
Psta_3063
PFAM: protein of unknown function DUF1552; KEGG: mxa:MXAN_4109 hypothetical protein.
  
     0.456
Psta_1692
PFAM: response regulator receiver; KEGG: bph:Bphy_4167 GAF sensor hybrid histidine kinase.
  
     0.455
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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