Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_4502PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone. (399 aa)    
Predicted Functional Partners:
Psta_3081
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hne:HNE_0773 PQQ repeat-containing protein.
  
     0.762
Psta_2542
SMART: Pyrrolo-quinoline quinone; KEGG: hne:HNE_0773 PQQ repeat-containing protein.
  
     0.759
Psta_2735
SMART: Pyrrolo-quinoline quinone; KEGG: afr:AFE_0029 tetrathionate hydrolase.
  
     0.757
Psta_2399
SMART: Pyrrolo-quinoline quinone; KEGG: eta:ETA_10310 putative lipoprotein.
  
     0.755
Psta_2423
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: sal:Sala_2204 pyrrolo-quinoline quinone.
  
     0.755
Psta_1270
FOG: WD40 repeat-like protein; KEGG: bmj:BMULJ_01777 putative lipoprotein.
  
     0.742
Psta_1668
SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone.
  
     0.735
Psta_0797
FOG: WD40 repeat-like protein; KEGG: cja:CJA_1484 PQQ enzyme repeat domain protein.
  
     0.731
Psta_1731
PFAM: protein of unknown function DUF214; KEGG: bpy:Bphyt_5006 protein of unknown function DUF214.
  
     0.730
Psta_1473
KEGG: hypothetical protein.
  
     0.720
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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