STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4503Coproporphyrinogen dehydrogenase; KEGG: rpc:RPC_1626 putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB. (436 aa)    
Predicted Functional Partners:
Psta_0142
KEGG: mxa:MXAN_2888 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 
0.927
Psta_4696
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
    
 0.907
Psta_4504
PFAM: glycine cleavage H-protein; KEGG: nme:NMB0575 glycine cleavage system protein H.
       0.792
Psta_4505
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_0440 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.759
Psta_4496
KEGG: plu:plu3307 hypothetical protein.
  
     0.721
Psta_4502
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone.
 
     0.714
Psta_1678
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.698
Psta_2636
KEGG: pmr:PMI1842 lipoprotein.
  
     0.688
Psta_2979
FOG: WD40 repeat-like protein; KEGG: cja:CJA_2276 serine/threonine protein kinase.
  
     0.674
Psta_4497
PFAM: Aldehyde Dehydrogenase; KEGG: plu:plu3306 hypothetical protein.
  
     0.657
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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