Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Psta_4516PFAM: TadE family protein; KEGG: mex:Mext_0138 TadE family protein. (136 aa)    
Predicted Functional Partners:
Psta_4515
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein.
       0.655
Psta_4514
PFAM: TadE family protein; KEGG: rso:RSc0649 putative transmembrane protein.
      
0.641
Psta_1080
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: csa:Csal_1657 Flp pilus assembly CpaB.
  
    0.471
Psta_2075
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rme:Rmet_0648 Flp pilus assembly CpaB.
  
    0.471
Psta_0130
KEGG: gbm:Gbem_1834 response regulator receiver protein.
  
    0.413
Psta_1191
Response regulator receiver protein; KEGG: pca:Pcar_1751 Flp pilus assembly ATPase CpaE.
  
    0.413
Psta_2077
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
  
    0.413
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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