Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4567KEGG: bid:Bind_1817 hypothetical protein. (947 aa)    
Predicted Functional Partners:
Psta_4568
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4- epimerase.
       0.773
Psta_4569
KEGG: swd:Swoo_1994 hypothetical protein.
       0.623
Psta_4570
KEGG: oan:Oant_2751 hypothetical protein.
       0.623
Psta_4571
PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase.
       0.623
Psta_4572
PFAM: ribulose-phosphate 3-epimerase; GtrA family protein; KEGG: similar to LOC494647 protein; K01783 ribulose-phosphate 3-epimerase.
       0.623
Psta_4573
Hypothetical protein.
       0.445
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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