Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_4572PFAM: ribulose-phosphate 3-epimerase; GtrA family protein; KEGG: similar to LOC494647 protein; K01783 ribulose-phosphate 3-epimerase. (363 aa)    
Predicted Functional Partners:
Psta_4570
KEGG: oan:Oant_2751 hypothetical protein.
  
  
 0.836
Psta_4571
PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase.
     
 0.790
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 
 0.783
Psta_4569
KEGG: swd:Swoo_1994 hypothetical protein.
       0.773
Psta_1600
TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: bxe:Bxe_B1309 transketolase; Belongs to the transketolase family.
  
 0.768
Psta_2486
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.714
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
   0.685
Psta_4568
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4- epimerase.
  
  
 0.652
Psta_4567
KEGG: bid:Bind_1817 hypothetical protein.
       0.623
Psta_2374
KEGG: acp:A2cp1_2616 flagellar protein FliS like protein.
    
   0.558
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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