STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4597PFAM: ThiJ/PfpI domain protein; KEGG: sus:Acid_2129 PfpI family intracellular peptidase. (190 aa)    
Predicted Functional Partners:
Psta_1949
PFAM: histone deacetylase superfamily; KEGG: sus:Acid_0301 histone deacetylase superfamily protein.
    
  0.547
Psta_4144
PFAM: ubiquitin-conjugating protein E2; KEGG: hypothetical protein.
    
  0.542
Psta_4148
PFAM: ubiquitin-conjugating protein E2; KEGG: hypothetical protein; K10576 ubiquitin- conjugating enzyme E2 H.
    
  0.542
Psta_4596
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: kpe:KPK_4085 rhizopine catabolism protein MocC.
       0.520
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.429
Psta_0866
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bcy:Bcer98_3215 succinate dehydrogenase iron- sulfur subunit.
   
 
 0.414
Psta_1207
KEGG: pfl:PFL_4401 hypothetical protein.
  
 
 0.411
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.