Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_4731TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: glo:Glov_0748 putative PAS/PAC sensor protein. (630 aa)    
Predicted Functional Partners:
Psta_4733
PFAM: protein of unknown function DUF214; KEGG: rsq:Rsph17025_3866 TRAP-type C4-dicarboxylate transport system periplasmic component-like protein.
 
  
 0.886
Psta_4732
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related.
 
    0.865
Psta_2099
KEGG: outer membrane efflux protein.
  
   0.601
Psta_2961
PFAM: secretion protein HlyD family protein; KEGG: sus:Acid_1656 RND family efflux transporter MFP subunit.
  
     0.584
Psta_2756
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_2223 ABC transporter related.
  
 
 0.575
Psta_2388
KEGG: ank:AnaeK_0667 hypothetical protein.
  
    0.560
Psta_3092
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: sde:Sde_2783 ABC transporter, membrane spanning subunit, DevC-like.
 
  
 0.546
Psta_3093
TIGRFAM: ABC exporter membrane fusion protein, DevB family; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_2782 multidrug resistance efflux pump-like.
  
     0.514
Psta_2758
PFAM: outer membrane efflux protein; KEGG: nar:Saro_3787 outer membrane protein-like protein.
  
   0.461
Psta_1220
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sus:Acid_4561 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.460
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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