STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_4762KEGG: pfo:Pfl01_1336 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (437 aa)    
Predicted Functional Partners:
Psta_4530
Diguanylate phosphodiesterase; PFAM: EAL domain protein; Forkhead-associated protein; SMART: EAL domain protein; Forkhead-associated protein; KEGG: dol:Dole_2992 diguanylate phosphodiesterase.
 
  
 0.843
Psta_4271
Diguanylate phosphodiesterase; PFAM: EAL domain protein; Forkhead-associated protein; SMART: Forkhead-associated protein; EAL domain protein; KEGG: dol:Dole_2992 diguanylate phosphodiesterase.
 
  
 0.830
Psta_0487
Diguanylate phosphodiesterase; PFAM: EAL domain protein; Forkhead-associated protein; SMART: Forkhead-associated protein; EAL domain protein; KEGG: hch:HCH_06590 FOG EAL domain-containing protein.
 
  
 0.783
Psta_2798
PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2559 metal dependent phosphohydrolase.
  
 
 0.781
Psta_0819
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver.
 
 
 0.776
Psta_0488
KEGG: gsu:GSU1643 GGDEF/response regulator receiver domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: CBS domain containing protein; GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver.
 
  
 0.719
Psta_0818
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: mgm:Mmc1_3072 response regulator receiver modulated metal dependent phosphohydrolase.
  
  
 0.656
Psta_4529
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Forkhead-associated protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Forkhead-associated protein; PAS domain containing protein.
 
 
 0.602
Psta_4015
Diguanylate cyclase and metal dependent phosphohydrolase; KEGG: gbm:Gbem_2068 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; metal- dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; metal- dependent phosphohydrolase HD region; PAS domain containing protein.
 
 
0.578
Psta_1412
KEGG: rru:Rru_A2361 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.542
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.