STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC19075.1DNA-binding transcriptional regulator YbjK. (185 aa)    
Predicted Functional Partners:
SDC19102.1
Fucose permease.
 
  
 0.839
SDC70705.1
Regulatory protein, tetR family.
  
     0.541
SDD17747.1
Transcriptional regulator, TetR family.
  
     0.485
SDC19136.1
Htaa protein.
       0.452
SDC54146.1
Hypothetical protein.
  
    0.426
SDD39056.1
Putative amidoligase enzyme.
   
    0.408
SDC51960.1
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.400
Your Current Organism:
Prauserella marina
NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.