STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC01863.1Cysteine desulfurase family protein, VC1184 subfamily. (400 aa)    
Predicted Functional Partners:
SDD50114.1
Nitrogen fixation protein NifU.
 
 
 0.920
SDD50074.1
Fe-S cluster assembly ATP-binding protein.
 
  
 0.878
SDD50035.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.862
SDD50055.1
Fe-S cluster assembly protein SufD.
 
 
 0.828
SDD50128.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.562
egtD
L-histidine Nalpha-methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
  
 0.555
SDD39589.1
Acyl transferase domain-containing protein.
  
 
 0.544
SDC01890.1
Hypothetical protein.
       0.543
egtB
iron(II)-dependent oxidoreductase; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.
  
  
 0.467
SDC25815.1
Acyl transferase domain-containing protein.
  
 
 0.440
Your Current Organism:
Prauserella marina
NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498
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