STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC86914.1Stage II sporulation protein AA (anti-sigma F factor antagonist). (106 aa)    
Predicted Functional Partners:
SDC86924.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.988
SDD68163.1
Histidine kinase-like ATPase domain-containing protein.
 
 
 0.814
SDC02269.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.781
SDD68214.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.733
SDD78935.1
Hypothetical protein.
 
   
 0.724
SDC68826.1
Serine/threonine-protein kinase RsbW.
 
 
 0.712
SDD29554.1
Signal transduction histidine kinase.
  
  
 0.706
SDC00250.1
Serine/threonine-protein kinase RsbW.
  
 
 0.673
SDC90367.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.605
SDC67003.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.569
Your Current Organism:
Prauserella marina
NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.