node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC56438.1 | SDC78005.1 | SAMN05421630_102595 | SAMN05421630_103601 | DNA polymerase-3 subunit epsilon. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.733 |
SDC56438.1 | SDD01435.1 | SAMN05421630_102595 | SAMN05421630_105190 | DNA polymerase-3 subunit epsilon. | Excinuclease UvrABC ATPase subunit. | 0.583 |
SDC56438.1 | SDD87070.1 | SAMN05421630_102595 | SAMN05421630_113210 | DNA polymerase-3 subunit epsilon. | DNA repair protein RecN (Recombination protein N). | 0.512 |
SDC56438.1 | SDE00745.1 | SAMN05421630_102595 | SAMN05421630_11658 | DNA polymerase-3 subunit epsilon. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.911 |
SDC56438.1 | mfd | SAMN05421630_102595 | SAMN05421630_11138 | DNA polymerase-3 subunit epsilon. | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.658 |
SDC56438.1 | recA | SAMN05421630_102595 | SAMN05421630_107418 | DNA polymerase-3 subunit epsilon. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.601 |
SDC56438.1 | ribBA | SAMN05421630_102595 | SAMN05421630_10972 | DNA polymerase-3 subunit epsilon. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.620 |
SDC56438.1 | uvrB | SAMN05421630_102595 | SAMN05421630_112178 | DNA polymerase-3 subunit epsilon. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.951 |
SDC78005.1 | SDC56438.1 | SAMN05421630_103601 | SAMN05421630_102595 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase-3 subunit epsilon. | 0.733 |
SDC78005.1 | SDD01435.1 | SAMN05421630_103601 | SAMN05421630_105190 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Excinuclease UvrABC ATPase subunit. | 0.644 |
SDC78005.1 | SDD87070.1 | SAMN05421630_103601 | SAMN05421630_113210 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA repair protein RecN (Recombination protein N). | 0.482 |
SDC78005.1 | SDE00745.1 | SAMN05421630_103601 | SAMN05421630_11658 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.964 |
SDC78005.1 | recA | SAMN05421630_103601 | SAMN05421630_107418 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.870 |
SDC78005.1 | uvrB | SAMN05421630_103601 | SAMN05421630_112178 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.926 |
SDC78005.1 | uvrC | SAMN05421630_103601 | SAMN05421630_10976 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.801 |
SDD01391.1 | SDD01435.1 | SAMN05421630_105188 | SAMN05421630_105190 | AraC-type DNA-binding protein. | Excinuclease UvrABC ATPase subunit. | 0.486 |
SDD01435.1 | SDC56438.1 | SAMN05421630_105190 | SAMN05421630_102595 | Excinuclease UvrABC ATPase subunit. | DNA polymerase-3 subunit epsilon. | 0.583 |
SDD01435.1 | SDC78005.1 | SAMN05421630_105190 | SAMN05421630_103601 | Excinuclease UvrABC ATPase subunit. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.644 |
SDD01435.1 | SDD01391.1 | SAMN05421630_105190 | SAMN05421630_105188 | Excinuclease UvrABC ATPase subunit. | AraC-type DNA-binding protein. | 0.486 |
SDD01435.1 | SDD87070.1 | SAMN05421630_105190 | SAMN05421630_113210 | Excinuclease UvrABC ATPase subunit. | DNA repair protein RecN (Recombination protein N). | 0.490 |