STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD02577.1Transglycosylase SLT domain-containing protein. (213 aa)    
Predicted Functional Partners:
SDD29396.1
Cation-transporting ATPase E.
  
  
 0.557
SDD08013.1
Cell wall-associated hydrolase, NlpC family.
  
 
 0.543
SDD85094.1
Papain fold toxin 1, glutamine deamidase.
  
 
 0.532
SDD02595.1
Hypothetical protein.
       0.512
SDC68156.1
Type VII secretion integral membrane protein EccD.
  
    0.502
SDC76621.1
Type VII secretion integral membrane protein EccD.
  
    0.502
SDD39369.1
Type VII secretion integral membrane protein EccD.
  
    0.502
SDD85260.1
Type VII secretion integral membrane protein EccD.
  
    0.502
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.485
SDC66008.1
AAA domain-containing protein.
  
 
 0.485
Your Current Organism:
Prauserella marina
NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498
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