STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD53274.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
SDD53232.1
Acetyltransferase (GNAT) family protein.
       0.781
SDD53245.1
Predicted acetyltransferase, GNAT superfamily.
     
 0.776
SDD53293.1
Succinate dehydrogenase / fumarate reductase cytochrome b subunit.
 
     0.727
SDC32980.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.705
SdhA
Succinate dehydrogenase / fumarate reductase flavoprotein subunit.
 
     0.688
SDD53333.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
   
 0.676
SDC43381.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.563
SDD53186.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
       0.487
SDD53205.1
Hypothetical protein.
       0.487
SDD53362.1
Cytochrome P450.
       0.428
Your Current Organism:
Prauserella marina
NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.