STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER42457.1Sulfate permease, SulP family. (486 aa)    
Predicted Functional Partners:
SES01249.1
Hypothetical protein.
    
   0.810
SER10189.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.767
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
   0.752
SER85206.1
DNA repair exonuclease SbcCD nuclease subunit.
    
   0.752
SER12968.1
Menaquinol-cytochrome c reductase cytochrome b/c subunit.
    
   0.751
SER12995.1
Menaquinol-cytochrome c reductase cytochrome b subunit.
    
   0.751
SES13047.1
Protein of unknown function.
    
   0.751
SER24885.1
Regulator of chromosome condensation (RCC1) repeat-containing protein.
    
   0.743
SER24912.1
Hypothetical protein.
    
   0.743
SER42424.1
Nucleotide-binding universal stress protein, UspA family.
  
    0.738
Your Current Organism:
Gracilibacillus ureilyticus
NCBI taxonomy Id: 531814
Other names: CGMCC 1.7727, G. ureilyticus, Gracilibacillus sp. MF38, Gracilibacillus ureilyticus Huo et al. 2010, JCM 15711, strain MF38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.