Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER60819.1 | SER60845.1 | SAMN04487944_1075 | SAMN04487944_1076 | Biotin transport system substrate-specific component. | Hypothetical protein. | 0.497 |
SER60819.1 | SER60876.1 | SAMN04487944_1075 | SAMN04487944_1077 | Biotin transport system substrate-specific component. | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.492 |
SER60819.1 | bioB | SAMN04487944_1075 | SAMN04487944_1074 | Biotin transport system substrate-specific component. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.831 |
SER60845.1 | SER60819.1 | SAMN04487944_1076 | SAMN04487944_1075 | Hypothetical protein. | Biotin transport system substrate-specific component. | 0.497 |
SER60845.1 | SER60876.1 | SAMN04487944_1076 | SAMN04487944_1077 | Hypothetical protein. | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.764 |
SER60845.1 | SER60903.1 | SAMN04487944_1076 | SAMN04487944_1078 | Hypothetical protein. | Two-component system, LytT family, sensor histidine kinase LytS. | 0.462 |
SER60845.1 | SER60937.1 | SAMN04487944_1076 | SAMN04487944_1079 | Hypothetical protein. | Two component transcriptional regulator, LytTR family. | 0.462 |
SER60845.1 | bioB | SAMN04487944_1076 | SAMN04487944_1074 | Hypothetical protein. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.479 |
SER60876.1 | SER60819.1 | SAMN04487944_1077 | SAMN04487944_1075 | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Biotin transport system substrate-specific component. | 0.492 |
SER60876.1 | SER60845.1 | SAMN04487944_1077 | SAMN04487944_1076 | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Hypothetical protein. | 0.764 |
SER60876.1 | SER60903.1 | SAMN04487944_1077 | SAMN04487944_1078 | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Two-component system, LytT family, sensor histidine kinase LytS. | 0.615 |
SER60876.1 | SER60937.1 | SAMN04487944_1077 | SAMN04487944_1079 | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Two component transcriptional regulator, LytTR family. | 0.611 |
SER60876.1 | bioB | SAMN04487944_1077 | SAMN04487944_1074 | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.470 |
SER60903.1 | SER60845.1 | SAMN04487944_1078 | SAMN04487944_1076 | Two-component system, LytT family, sensor histidine kinase LytS. | Hypothetical protein. | 0.462 |
SER60903.1 | SER60876.1 | SAMN04487944_1078 | SAMN04487944_1077 | Two-component system, LytT family, sensor histidine kinase LytS. | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.615 |
SER60903.1 | SER60937.1 | SAMN04487944_1078 | SAMN04487944_1079 | Two-component system, LytT family, sensor histidine kinase LytS. | Two component transcriptional regulator, LytTR family. | 0.992 |
SER60937.1 | SER60845.1 | SAMN04487944_1079 | SAMN04487944_1076 | Two component transcriptional regulator, LytTR family. | Hypothetical protein. | 0.462 |
SER60937.1 | SER60876.1 | SAMN04487944_1079 | SAMN04487944_1077 | Two component transcriptional regulator, LytTR family. | Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.611 |
SER60937.1 | SER60903.1 | SAMN04487944_1079 | SAMN04487944_1078 | Two component transcriptional regulator, LytTR family. | Two-component system, LytT family, sensor histidine kinase LytS. | 0.992 |
bioB | SER60819.1 | SAMN04487944_1074 | SAMN04487944_1075 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Biotin transport system substrate-specific component. | 0.831 |
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