Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SER04214.1 | SER13467.1 | SAMN04487944_10119 | SAMN04487944_101350 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.798 |
| SER04214.1 | SER16120.1 | SAMN04487944_10119 | SAMN04487944_101451 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AE. | 0.715 |
| SER04214.1 | SER16170.1 | SAMN04487944_10119 | SAMN04487944_101453 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AC. | 0.740 |
| SER04214.1 | SER16228.1 | SAMN04487944_10119 | SAMN04487944_101455 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AA. | 0.761 |
| SER04214.1 | SER17912.1 | SAMN04487944_10119 | SAMN04487944_101523 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Similar to stage IV sporulation protein. | 0.743 |
| SER04214.1 | SER96815.1 | SAMN04487944_10119 | SAMN04487944_1148 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sporulation integral membrane protein YlbJ. | 0.760 |
| SER04214.1 | SES10808.1 | SAMN04487944_10119 | SAMN04487944_11870 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.808 |
| SER04214.1 | SES22912.1 | SAMN04487944_10119 | SAMN04487944_12528 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | AbrB family transcriptional regulator, stage V sporulation protein T. | 0.796 |
| SER04214.1 | SES28084.1 | SAMN04487944_10119 | SAMN04487944_13310 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein R. | 0.798 |
| SER04214.1 | spoIIAB | SAMN04487944_10119 | SAMN04487944_101397 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.840 |
| SER13467.1 | SER04214.1 | SAMN04487944_101350 | SAMN04487944_10119 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.798 |
| SER13467.1 | SER16120.1 | SAMN04487944_101350 | SAMN04487944_101451 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage III sporulation protein AE. | 0.758 |
| SER13467.1 | SER16170.1 | SAMN04487944_101350 | SAMN04487944_101453 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage III sporulation protein AC. | 0.800 |
| SER13467.1 | SER16228.1 | SAMN04487944_101350 | SAMN04487944_101455 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage III sporulation protein AA. | 0.801 |
| SER13467.1 | SER17912.1 | SAMN04487944_101350 | SAMN04487944_101523 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Similar to stage IV sporulation protein. | 0.749 |
| SER13467.1 | SER96815.1 | SAMN04487944_101350 | SAMN04487944_1148 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Sporulation integral membrane protein YlbJ. | 0.773 |
| SER13467.1 | SES10808.1 | SAMN04487944_101350 | SAMN04487944_11870 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.832 |
| SER13467.1 | SES22912.1 | SAMN04487944_101350 | SAMN04487944_12528 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | AbrB family transcriptional regulator, stage V sporulation protein T. | 0.779 |
| SER13467.1 | SES28084.1 | SAMN04487944_101350 | SAMN04487944_13310 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage II sporulation protein R. | 0.806 |
| SER13467.1 | spoIIAB | SAMN04487944_101350 | SAMN04487944_101397 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.813 |
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