STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES12908.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (232 aa)    
Predicted Functional Partners:
SES12894.1
Signal transduction histidine kinase.
 
  0.974
SES16002.1
Serine/threonine protein kinase and signal transduction histidine kinase with GAF sensor.
  
 0.965
SER15292.1
Two-component system, NtrC family, sensor histidine kinase AtoS.
 
 0.914
SER57060.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.914
SES12852.1
Putative ABC transport system permease protein.
 
   
 0.865
SES28234.1
Two-component system, response regulator, stage 0 sporulation protein F.
 
 
 0.858
SER57664.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.802
SES03204.1
Two-component system, OmpR family, sensor histidine kinase BaeS.
 
  0.792
SES22020.1
Hypothetical protein.
 
 0.776
SES07694.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.770
Your Current Organism:
Gracilibacillus ureilyticus
NCBI taxonomy Id: 531814
Other names: CGMCC 1.7727, G. ureilyticus, Gracilibacillus sp. MF38, Gracilibacillus ureilyticus Huo et al. 2010, JCM 15711, strain MF38
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