Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FIC_00007Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)    
Predicted Functional Partners:
FIC_00008
Putative glycoprotease family exported protein.
       0.773
FIC_00003
Hypothetical protein.
  
    0.756
FIC_00004
Muramoyltetrapeptide carboxypeptidase.
       0.746
FIC_00005
Hypothetical protein.
       0.746
FIC_00006
Hypothetical protein; Belongs to the UPF0102 family.
       0.746
FIC_02398
DNA-3-methyladenine glycosylase.
      0.734
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.606
FIC_00985
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein); Belongs to the GcvP family.
 
      0.574
FIC_00001
Ribose 5-phosphate isomerase B.
     
 0.531
FIC_00264
ATP-dependent helicase; Belongs to the helicase family. UvrD subfamily.
  
    0.454
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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