STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_00542SusD, outer membrane protein. (520 aa)    
Predicted Functional Partners:
FIC_00543
Hypothetical protein.
 
  
 0.946
FIC_00541
SusC, outer membrane protein involved in starch binding.
     0.944
FIC_00544
Hypothetical protein.
 
  
 0.856
FIC_00545
Alpha-glucosidase.
 
  
 0.829
FIC_00546
Alpha-amylase (Neopullulanase) SusA; Belongs to the glycosyl hydrolase 13 family.
 
    0.827
FIC_01115
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
 
    0.772
FIC_00548
Hypothetical transport protein.
 
    0.722
FIC_00677
Alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
     0.710
FIC_02316
Putative outer membrane protein, probably involved in nutrient binding.
 
   
 0.617
FIC_02315
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.545
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.