STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_00589ErfK/YbiS/YcfS/YnhG family protein. (325 aa)    
Predicted Functional Partners:
FIC_00800
D-alanyl-D-alanine carboxypeptidase.
  
  
 0.636
glgA
Glycogen synthase, ADP-glucose transglucosylase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.596
FIC_01456
Hypothetical protein.
 
     0.584
FIC_00430
Hypothetical protein.
  
     0.549
FIC_01847
Hypothetical protein.
  
     0.536
FIC_01770
Serine-type D-Ala-D-Ala carboxypeptidase.
    
 0.525
FIC_00586
Putative alpha-dextrin endo-1, 6-alpha-glucosidase.
 
     0.515
glgB
1,4-alpha-glucan (glycogen) branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.495
FIC_02472
Hypothetical protein.
  
     0.428
FIC_00439
Esterase/lipase/thioesterase family protein.
  
     0.427
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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