STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01069cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (189 aa)    
Predicted Functional Partners:
FIC_01073
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
     0.829
FIC_01712
Signal transduction histidine kinase.
  
 
 0.623
FIC_00774
PAS/PAC domain protein.
  
 
 0.591
FIC_01070
Putative secreted protein.
       0.584
FIC_01779
PAS/PAC domain protein.
  
 
 0.572
FIC_01072
Protein of unknown function DUF306, Meta and HslJ.
  
    0.554
FIC_01071
Transthyretin-like periplasmic protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.551
FIC_01074
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.542
FIC_01708
FOG: PAS/PAC domain protein.
  
 
 0.542
mnmE
GTPase and tRNA-U34 5-formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.526
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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