STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01109Helix-turn-helix- domain containing protein, AraC type. (563 aa)    
Predicted Functional Partners:
FIC_01110
Putative regulatory protein.
 
     0.867
FIC_00262
Hypothetical protein.
  
     0.717
FIC_00261
Transglutaminase-like enzyme.
  
     0.651
FIC_02494
Hypothetical protein.
  
     0.640
FIC_01448
ATPase, AAA family protein.
  
     0.635
FIC_02313
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.622
FIC_01588
Hypothetical protein.
  
     0.611
FIC_01234
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.595
FIC_02557
Probable outer membrane receptor protein.
  
     0.590
FIC_01106
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.588
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.