Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
FIC_01117 | FIC_01146 | Possible 2-component sensor protein. | Outer membrane protein. | 0.487 |
FIC_01117 | FIC_01148 | Possible 2-component sensor protein. | Putative transport protein. | 0.510 |
FIC_01145 | FIC_01146 | Transcriptional regulator, AraC family. | Outer membrane protein. | 0.762 |
FIC_01145 | FIC_01147 | Transcriptional regulator, AraC family. | Putative multidrug resistance protein. | 0.644 |
FIC_01145 | FIC_01148 | Transcriptional regulator, AraC family. | Putative transport protein. | 0.785 |
FIC_01146 | FIC_01117 | Outer membrane protein. | Possible 2-component sensor protein. | 0.487 |
FIC_01146 | FIC_01145 | Outer membrane protein. | Transcriptional regulator, AraC family. | 0.762 |
FIC_01146 | FIC_01147 | Outer membrane protein. | Putative multidrug resistance protein. | 0.981 |
FIC_01146 | FIC_01148 | Outer membrane protein. | Putative transport protein. | 0.941 |
FIC_01146 | FIC_01317 | Outer membrane protein. | Probable Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.519 |
FIC_01146 | FIC_01318 | Outer membrane protein. | Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.436 |
FIC_01146 | FIC_01712 | Outer membrane protein. | Signal transduction histidine kinase. | 0.427 |
FIC_01146 | FIC_01820 | Outer membrane protein. | Membrane fusion efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.462 |
FIC_01146 | FIC_02403 | Outer membrane protein. | Multidrug resistance protein, AcrA/AcrE family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.462 |
FIC_01146 | FIC_02404 | Outer membrane protein. | AcrB/AcrD/AcrF family membrane transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.436 |
FIC_01147 | FIC_01145 | Putative multidrug resistance protein. | Transcriptional regulator, AraC family. | 0.644 |
FIC_01147 | FIC_01146 | Putative multidrug resistance protein. | Outer membrane protein. | 0.981 |
FIC_01147 | FIC_01148 | Putative multidrug resistance protein. | Putative transport protein. | 0.965 |
FIC_01147 | FIC_01317 | Putative multidrug resistance protein. | Probable Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.434 |
FIC_01147 | FIC_01712 | Putative multidrug resistance protein. | Signal transduction histidine kinase. | 0.731 |
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