STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01804Helicase domain protein. (818 aa)    
Predicted Functional Partners:
FIC_01806
mRNA 3'-end processing factor.
 
    0.956
FIC_01805
DNA ligase.
 
    0.955
FIC_01803
Hypothetical protein.
 
    0.944
FIC_01802
Outer membrane lipoprotein (lipocalin); Belongs to the calycin superfamily. Lipocalin family.
       0.698
FIC_00988
Formamidopyrimidine-DNA glycolase.
  
  
 0.547
FIC_02096
Endonuclease.
  
  
 0.547
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
   
    0.522
FIC_01808
General stress protein.
 
     0.501
FIC_01807
Hypothetical protein.
 
     0.500
FIC_01801
Competence/damage-inducible protein CinA; Belongs to the CinA family.
       0.445
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.