STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01855BatC. (246 aa)    
Predicted Functional Partners:
FIC_01856
BatD.
 
 
 0.956
FIC_01854
BatB.
 
   
 0.862
FIC_01852
Hypothetical protein.
 
     0.837
FIC_01851
Hypothetical protein; Similar to PA3071.
 
    0.825
FIC_01853
BatA (Bacteroides aerotolerance operon).
 
   
 0.821
FIC_00241
Chaperone protein HtpG.
   
 0.656
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.645
FIC_01349
Probable peptidyl-prolyl cis-trans isomerase.
 
 0.636
FIC_00742
Hypothetical protein.
   
 0.631
FIC_01857
Multiple antibiotic resistance protein marC.
       0.628
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.