STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01870Pectate lyase. (657 aa)    
Predicted Functional Partners:
FIC_01869
Rhamnogalacturonan acetylesterase.
   
 0.995
FIC_01873
Probable lipase/esterase.
     0.993
FIC_01874
Pectate lyase/Amb allergen.
 
 
 0.984
FIC_01877
Pectate lyase/Amb allergen.
 
 
 0.976
FIC_01871
Rhamnogalacturonides degradation protein RhiN.
    0.969
FIC_01872
Hypothetical protein.
 
     0.947
FIC_01881
Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
  
 0.934
FIC_01879
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.752
FIC_01880
TonB-dependent receptor, plug.
  
     0.733
FIC_01738
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.544
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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