STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01880TonB-dependent receptor, plug. (1003 aa)    
Predicted Functional Partners:
FIC_01879
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.942
FIC_01881
Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.914
FIC_01878
Pectinesterase.
 
     0.854
FIC_01870
Pectate lyase.
  
     0.733
FIC_01874
Pectate lyase/Amb allergen.
  
     0.722
FIC_01526
Putative outer membrane protein probably involved in nutrient binding.
 
   0.714
FIC_01872
Hypothetical protein.
  
     0.711
FIC_01741
RagB/SusD domain protein.
 
 
   0.687
FIC_01869
Rhamnogalacturonan acetylesterase.
  
     0.683
FIC_01873
Probable lipase/esterase.
  
     0.660
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.