STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01882LacI family transcriptional regulator. (340 aa)    
Predicted Functional Partners:
FIC_01744
Xylulose kinase.
 
 
 
 0.622
FIC_01881
Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.576
FIC_01880
TonB-dependent receptor, plug.
 
     0.575
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.573
FIC_00774
PAS/PAC domain protein.
   
 
 0.572
FIC_01708
FOG: PAS/PAC domain protein.
    
 
 0.548
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
    
 
 0.520
FIC_02253
NADP-dependent malic enzyme.
    
 
 0.519
FIC_01879
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.506
FIC_01712
Signal transduction histidine kinase.
    
 
 0.501
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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