STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIC_01989Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase. (829 aa)    
Predicted Functional Partners:
FIC_02219
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.965
FIC_02216
Phenylacetate-CoA oxygenase, PaaH subunit.
 
  
 0.920
FIC_02218
phenylacetate-CoA oxygenase, PaaJ subunit.
 
  
 0.917
FIC_02217
Phenylacetate-CoA oxygenase, PaaI subunit.
 
  
 0.891
FIC_02284
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 
 0.888
FIC_02286
Phenylacetate-CoA oxygenase, PaaG subunit.
 
  
 0.888
FIC_00946
3-hydroxyacyl-CoA dehydrogenase/Enoyl-CoA hydratase (isoleucine degradation).
  
 0.887
FIC_01598
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.876
FIC_01991
Citrate synthase (si); Belongs to the citrate synthase family.
  
 
 0.872
FIC_02081
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.851
Your Current Organism:
Flavobacteriaceae bacterium 351910
NCBI taxonomy Id: 531844
Other names: F. bacterium 3519-10, Flavobacteriaceae bacterium 3519-10
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