STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB36827.1Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (230 aa)    
Predicted Functional Partners:
SKB37493.1
Effector-binding domain-containing protein.
 
     0.647
SKB36816.1
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.544
SKB93880.1
Ribosomal protein S18 acetylase RimI.
  
     0.509
SKB85506.1
Patatin-like phospholipase.
  
     0.507
SKB62714.1
Hypothetical protein.
  
     0.494
SKB93497.1
Hypothetical protein.
  
     0.491
SKC14929.1
Protein of unknown function.
  
     0.487
SKC06537.1
TRAP transporter solute receptor, TAXI family.
  
     0.481
SKB65768.1
Protein of unknown function.
  
     0.472
SKB36838.1
Hypothetical protein.
       0.464
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.