STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB66508.1Invasion protein IalB, involved in pathogenesis. (169 aa)    
Predicted Functional Partners:
SKB66502.1
Hypothetical protein.
 
     0.935
SKC08407.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.774
SKC08575.1
Hypothetical protein.
  
     0.774
SKB91444.1
Hypothetical protein.
  
     0.768
SKB39757.1
Flagellar export protein FliJ.
  
     0.767
SKB89683.1
Phage-related minor tail protein.
  
     0.767
SKB70526.1
Hypothetical protein.
  
     0.765
SKB59894.1
Invasion protein IalB, involved in pathogenesis.
  
     0.764
SKB52038.1
Uncharacterized membrane protein.
  
     0.757
SKB98517.1
Outer membrane immunogenic protein.
  
     0.751
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.