STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB78968.1NIPSNAP protein. (110 aa)    
Predicted Functional Partners:
SKB78975.1
Aspartate/methionine/tyrosine aminotransferase.
       0.818
SKB67343.1
DNA-binding transcriptional regulator, ArsR family.
 
     0.767
SKB79009.1
2-Methylisocitrate lyase, PEP mutase family.
 
     0.534
SKB78996.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.428
SKB31734.1
Transcriptional regulator, MarR family with acetyltransferase activity.
  
    0.427
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.