STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB84718.1Galactonate dehydratase. (374 aa)    
Predicted Functional Partners:
SKC13876.1
D-galactarolactone cycloisomerase.
  
  
 
0.762
SKC11280.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
  0.690
SKC16393.1
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
0.672
SKB84700.1
Multiple sugar transport system substrate-binding protein.
 
     0.620
SKB44247.1
Transcriptional regulator, IclR family.
 
  
  0.574
SKB84680.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
  0.566
SKB84710.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
       0.552
SKB85359.1
2-dehydro-3-deoxygalactonokinase.
 
 
 0.544
SKB81065.1
L-fuconolactonase.
 
  
 0.540
SKC11276.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.521
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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