STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB90916.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
SKB90926.1
Hypothetical protein.
       0.777
SKB90936.1
Two-component system, cell cycle sensor histidine kinase DivJ.
       0.758
SKB45369.1
Hypothetical protein.
  
     0.634
SKB70170.1
Protein of unknown function.
  
     0.598
SKC15508.1
dCTP deaminase.
  
     0.595
SKB99765.1
Hypothetical protein.
  
     0.558
SKB77620.1
HemY protein.
  
     0.555
SKB70481.1
Signal transduction histidine kinase.
 
     0.533
SKC08525.1
NifU homolog involved in Fe-S cluster formation.
  
     0.531
SKB90285.1
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
  
     0.527
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.