STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB91165.1Ceramide glucosyltransferase. (393 aa)    
Predicted Functional Partners:
SKB36142.1
Hypothetical protein.
  
 
 0.939
SKB66615.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.893
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.799
SKB80797.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.794
SKB91158.1
Uncharacterized protein YhfF.
       0.779
SKB57595.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.761
SKB57565.1
Glycosyltransferase involved in cell wall bisynthesis.
    
 0.724
pheS
phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.716
SKB40348.1
UDPglucose 6-dehydrogenase.
  
 
 0.694
SKC00901.1
Tfp pilus assembly protein PilF.
 
 
 
 0.667
Your Current Organism:
Bosea thiooxidans
NCBI taxonomy Id: 53254
Other names: ATCC 700366, B. thiooxidans, DSM 9653, Gram-negative sodium thiosulfate oxidizer, strain BI 42
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