Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_00136 | CRD_00137 | CRD_00136 | CRD_00137 | Hypothetical protein. | Conserved hypothetical protein. | 0.773 |
CRD_00136 | CRD_00138 | CRD_00136 | CRD_00138 | Hypothetical protein. | Phage SPO1 DNA polymerase-related protein. | 0.679 |
CRD_00136 | CRD_01214 | CRD_00136 | CRD_01214 | Hypothetical protein. | Cell shape determining protein MreB/Mrl. | 0.825 |
CRD_00136 | CRD_02325 | CRD_00136 | CRD_02325 | Hypothetical protein. | CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.706 |
CRD_00136 | gatA | CRD_00136 | CRD_00135 | Hypothetical protein. | Glutamyl-tRNA(Gln) amidotransferase A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.485 |
CRD_00136 | rpl9 | CRD_00136 | CRD_00665 | Hypothetical protein. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.481 |
CRD_00136 | rplV | CRD_00136 | CRD_02888 | Hypothetical protein. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.650 |
CRD_00136 | rplW | CRD_00136 | CRD_02891 | Hypothetical protein. | Ribosomal L23 protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.650 |
CRD_00136 | rpmC | CRD_00136 | CRD_02885 | Hypothetical protein. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.650 |
CRD_00136 | secA | CRD_00136 | CRD_01917 | Hypothetical protein. | SecA protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.652 |
CRD_00137 | CRD_00136 | CRD_00137 | CRD_00136 | Conserved hypothetical protein. | Hypothetical protein. | 0.773 |
CRD_00137 | CRD_00138 | CRD_00137 | CRD_00138 | Conserved hypothetical protein. | Phage SPO1 DNA polymerase-related protein. | 0.679 |
CRD_00137 | CRD_01214 | CRD_00137 | CRD_01214 | Conserved hypothetical protein. | Cell shape determining protein MreB/Mrl. | 0.847 |
CRD_00137 | CRD_02325 | CRD_00137 | CRD_02325 | Conserved hypothetical protein. | CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.706 |
CRD_00137 | gatA | CRD_00137 | CRD_00135 | Conserved hypothetical protein. | Glutamyl-tRNA(Gln) amidotransferase A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.485 |
CRD_00137 | rpl9 | CRD_00137 | CRD_00665 | Conserved hypothetical protein. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.481 |
CRD_00137 | rplV | CRD_00137 | CRD_02888 | Conserved hypothetical protein. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.650 |
CRD_00137 | rplW | CRD_00137 | CRD_02891 | Conserved hypothetical protein. | Ribosomal L23 protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.650 |
CRD_00137 | rpmC | CRD_00137 | CRD_02885 | Conserved hypothetical protein. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.650 |
CRD_00137 | secA | CRD_00137 | CRD_01917 | Conserved hypothetical protein. | SecA protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.652 |
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