STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_00154Glycosyl transferase, family 2. (320 aa)    
Predicted Functional Partners:
CRD_00155
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme (aminotransferase); Belongs to the DegT/DnrJ/EryC1 family.
  
    0.785
CRD_01055
Glycosyl transferase, family 2.
  
     0.773
CRD_02966
Glycosyl transferase, family 2.
 
  
 0.773
CRD_02307
Non-ribosomal peptide synthase.
  
 0.737
CRD_02250
Conserved hypothetical protein.
    
  0.720
CRD_00157
Hypothetical protein.
 
    0.648
CRD_00156
Nucleotidyl transferase.
  
  0.601
CRD_00158
CDP-glucose-4,6-dehydratase.
  
 
  0.585
CRD_01112
Glycosyl transferase, family 39.
    
 0.548
CRD_00162
3-beta hydroxysteroid dehydrogenase/isomerase.
 
 
  0.535
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.