STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_00352Phosphoglycerate/bisphosphoglycerate mutase. (224 aa)    
Predicted Functional Partners:
CRD_00811
Conserved hypothetical protein.
  
     0.680
CRD_03047
Ankyrin.
   
 0.643
CRD_03048
Ankyrin.
   
 0.643
CRD_02852
Conserved hypothetical protein.
  
    0.632
CRD_00809
Hypothetical protein.
  
     0.617
thrS
Threonyl-tRNA synthetase, class IIa.
    
  0.617
CRD_02567
Threonyl-tRNA synthetase.
    
  0.617
CRD_00810
Conserved hypothetical protein.
  
     0.608
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
 
 0.604
CRD_00299
Protein of unknown function DUF102; Belongs to the UPF0284 family.
  
 
 0.603
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.