STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_00463Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)    
Predicted Functional Partners:
CRD_02307
Non-ribosomal peptide synthase.
 
 
 0.891
CRD_01080
Hypothetical protein.
  
 
  0.747
CRD_01539
Non-ribosomal peptide synthase.
 
  
 0.730
CRD_02195
Ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
 
  0.705
CRD_00124
Beta-ketoacyl synthase.
  
 
 0.659
CRD_02157
sxtA.
  
 
 0.659
CRD_00376
Delta-1-pyrroline-5-carboxylate dehydrogenase 2; Belongs to the aldehyde dehydrogenase family.
   
    0.635
CRD_00377
Hypothetical protein.
   
    0.635
CRD_00462
tRNA--hydroxylase.
       0.576
CRD_00461
Amino acid-binding ACT.
  
    0.473
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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