Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_00673 | CRD_00854 | CRD_00673 | CRD_00854 | Rhodanese-like protein. | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.787 |
CRD_00673 | CRD_02307 | CRD_00673 | CRD_02307 | Rhodanese-like protein. | Non-ribosomal peptide synthase. | 0.945 |
CRD_00673 | rpl21 | CRD_00673 | CRD_01167 | Rhodanese-like protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.679 |
CRD_00673 | rplK | CRD_00673 | CRD_01012 | Rhodanese-like protein. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.672 |
CRD_00673 | rplM | CRD_00673 | CRD_02866 | Rhodanese-like protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.665 |
CRD_00673 | rplQ | CRD_00673 | CRD_02868 | Rhodanese-like protein. | Ribosomal protein L17. | 0.685 |
CRD_00673 | rpsQ | CRD_00673 | CRD_02884 | Rhodanese-like protein. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.869 |
CRD_00673 | thiG | CRD_00673 | CRD_00411 | Rhodanese-like protein. | Bifunctional protein goxB/thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.662 |
CRD_00673 | truA | CRD_00673 | CRD_02867 | Rhodanese-like protein. | tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.774 |
CRD_00673 | ybeY | CRD_00673 | CRD_03060 | Rhodanese-like protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.898 |
CRD_00854 | CRD_00673 | CRD_00854 | CRD_00673 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Rhodanese-like protein. | 0.787 |
CRD_00854 | CRD_02307 | CRD_00854 | CRD_02307 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Non-ribosomal peptide synthase. | 0.911 |
CRD_00854 | rpl21 | CRD_00854 | CRD_01167 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.869 |
CRD_00854 | rplK | CRD_00854 | CRD_01012 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.905 |
CRD_00854 | rplM | CRD_00854 | CRD_02866 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.920 |
CRD_00854 | rplQ | CRD_00854 | CRD_02868 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Ribosomal protein L17. | 0.931 |
CRD_00854 | rpsQ | CRD_00854 | CRD_02884 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
CRD_00854 | ybeY | CRD_00854 | CRD_03060 | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.921 |
CRD_02307 | CRD_00673 | CRD_02307 | CRD_00673 | Non-ribosomal peptide synthase. | Rhodanese-like protein. | 0.945 |
CRD_02307 | CRD_00854 | CRD_02307 | CRD_00854 | Non-ribosomal peptide synthase. | Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.911 |
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