STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_00764Hypothetical protein. (209 aa)    
Predicted Functional Partners:
CRD_00763
Hypothetical protein.
  
 
 0.872
CRD_00762
CRISPR-associated helicase Cas3.
      0.864
CRD_00765
Conserved hypothetical protein.
    
 0.756
CRD_00761
Hypothetical protein.
       0.516
cas1
Protein of unknown function DUF48; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
  
 0.465
CRD_00766
Hypothetical protein.
       0.428
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.